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development:nutmeg [2018/10/21 15:00]
42.49.180.224 [Integration with NUTMEG]
development:nutmeg [2017/08/17 11:21] (current)
127.0.0.1 external edit
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-<note warning>+ <note warning>
 The purpose of this page is just to serve as todo or scratch pad for the development project and to list and share some ideas. ​ The purpose of this page is just to serve as todo or scratch pad for the development project and to list and share some ideas. ​
  
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-====== Integration with NUTMEG ====== +==== 2) fileio questions ​==== 
-  ​ +  ​* How is it recommended to deal with datasets larger than one'​s ​RAM? i.e. is there a recommended pipeline to follow? ​(e.g. load in trials individually,​ do separate filtering computations,​ then bring it all together ​to compute an inverse weight, apply weights to trials separately again, etc). 
-  1) Identify pieces of code in common and avoid replication +  ​* BTi_UCSF support? ​(No
-  2) NUTMEG can call FieldTrip'​s ​fileio +  ​* Can all data formats be read in as single  
-  3) NUTMEG can call FieldTrip'​s forward ​(including the change ​to treating reference electrodes as separate+       * CTF can, not sure with other formats. ​(file bug if not true for all formats
-  ​4) What does NM do that does not exist (or done wellin FT? place in fieldtrip/​external/​nutmeg +       * Would help if could be done at line ''​data.trial = cutdat;'' ​in ft_preprocessing. 
-  ​5) What does FT do that does not exist (or done well) in NM?  +       * write a subfunction ft_single that loops over trials and singles each 
-  6) create nutmeg/​external/​fieldtrip for functions ​other than fileio or forward ​(call to sites.google ​for this code+  ​* ft_chantype(data.label'​unknown'​ in test case for neuromag. 
-  7) changes to FieldTrip to be compatible with running ​in Nutmeg +  ​* Issue of clearing a data variable ​in Matlab but it still takes up memory (with FT but not with NM).
-  ​8conversion functions +
-  ​9) examples ​of switching between toolboxes +
-  10) try Subject01.ds ​in NM and/or MEGSIM dataset in both toolboxes.+
  
-See [[/​development/​compat]] for mydepfun example 
 ==== 3) Forward modelling ==== ==== 3) Forward modelling ====
   * ft_prepare_localspheres should not call '​clf'​ and '​cla'​ as this will mess with the Nutmeg figures. Can it instead call:  hfig=figure;​ and then use hfig handle for plotting?   * ft_prepare_localspheres should not call '​clf'​ and '​cla'​ as this will mess with the Nutmeg figures. Can it instead call:  hfig=figure;​ and then use hfig handle for plotting?
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   cfg.ivar=1:​5;​   cfg.ivar=1:​5;​
   stat=ft_sourcestatistics(cfg,​source{1});​   stat=ft_sourcestatistics(cfg,​source{1});​
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