FT_PLOT_SLICE
Note that this reference documentation is identical to the help that is displayed in MATLAB when you type “help ft_plot_slice”.
FT_PLOT_SLICE plots a 2-D cut through a 3-D volume and interpolates if needed Use as ft_plot_slice(dat, ...) or ft_plot_slice(dat, mask, ...) where dat and mask are equal-sized 3-D arrays. Additional options should be specified in key-value pairs and can be 'transform' = 4x4 homogeneous transformation matrix specifying the mapping from voxel coordinates to the coordinate system in which the data are plotted. 'location' = 1x3 vector specifying a point on the plane which will be plotted the coordinates are expressed in the coordinate system in which the data will be plotted. location defines the origin of the plane 'orientation' = 1x3 vector specifying the direction orthogonal through the plane which will be plotted (default = [0 0 1]) 'unit' = string, can be 'm', 'cm' or 'mm (default is automatic) 'resolution' = number (default = 1 mm) 'datmask' = 3D-matrix with the same size as the data matrix, serving as opacitymap If the second input argument to the function contains a matrix, this will be used as the mask 'maskstyle' = string, 'opacity' or 'colormix', defines the rendering 'background' = needed when maskstyle is 'colormix', 3D-matrix with the same size as the data matrix, serving as grayscale image that provides the background 'opacitylim' = 1x2 vector specifying the limits for opacity masking 'interpmethod' = string specifying the method for the interpolation, see INTERPN (default = 'nearest') 'style' = string, 'flat' or '3D' 'colormap' = string, see COLORMAP 'clim' = 1x2 vector specifying the min and max for the colorscale You can plot the slices from the volume together with an intersection of the slices with a triangulated surface mesh (e.g. a cortical sheet) using 'intersectmesh' = triangulated mesh, see FT_PREPARE_MESH 'intersectcolor' = string, color specification 'intersectlinestyle' = string, line specification 'intersectlinewidth' = number See also FT_PLOT_ORTHO, FT_PLOT_MONTAGE, FT_SOURCEPLOT