FT_SPIKEDOWNSAMPLE
Note that this reference documentation is identical to the help that is displayed in MATLAB when you type “help ft_spikedownsample”.
FT_SPIKEDOWNSAMPLE takes electrophysiological data that was continuoudly sampled at 32KHz and preprocesses and downsamples it to obtain the LFP data, which can subsequently be processed in more detail. Use as [cfg] = ft_spikedownsample(cfg) The configuration should contain cfg.dataset = string with the input dataset cfg.output = string with the output dataset (default is determined automatic) cfg.dataformat = string with the output dataset format, see WRITE_DATA cfg.channel = Nx1 cell-array with selection of channels (default = 'all'), see FT_CHANNELSELECTION for details cfg.fsample = desired sampling frequency in Hz (default = 1000) cfg.method = resampling method, can be 'resample', 'decimate' or 'downsample' cfg.timestampdefinition = 'orig' or 'sample' cfg.channelprefix = string, will be added to channel name, e.g. 'lfp' -> 'lfp_ncs001' (default = []) cfg.calibration = optional scaling factor to apply to the data to convert it in uV, see below The Neuralynx acquisition system at the FCDC in Nijmegen makes use of Plexon headstages which have a amplification of 20x. The data that is written by the Neuralynx acquisition software therefore is 20x larger than the true microvolt values. When operating FT_SPIKEDOWNSAMPLE on the *.ncs files that are recorded with the Neuralynx Cheetah software, the calibration should be set to 1/20. The raw dma file (*.nrd) and the splitted DMA files contains AD values that are not scaled in uV and require an additional factor of 64x. If you operate FT_SPIKEDOWNSAMPLE on raw dma files or on splitted DMA files, the calibration should be set to 1/(64*20). The default is to process the full dataset. You can select a latency range with cfg.latency = [begin end], default is [0 inf] or you can specify multiple latency segments with cfg.latency = [b1 e1; b2 e2; ...] Furthermore, the configuration can contain the following preprocessing options cfg.preproc.lpfilter = 'no' or 'yes' lowpass filter cfg.preproc.hpfilter = 'no' or 'yes' highpass filter cfg.preproc.bpfilter = 'no' or 'yes' bandpass filter cfg.preproc.lnfilter = 'no' or 'yes' line noise removal using notch filter cfg.preproc.dftfilter = 'no' or 'yes' line noise removal using discrete fourier transform cfg.preproc.medianfilter = 'no' or 'yes' jump preserving median filter cfg.preproc.lpfreq = lowpass frequency in Hz cfg.preproc.hpfreq = highpass frequency in Hz cfg.preproc.bpfreq = bandpass frequency range, specified as [low high] in Hz cfg.preproc.lnfreq = line noise frequency in Hz, default 50Hz cfg.preproc.lpfiltord = lowpass filter order cfg.preproc.hpfiltord = highpass filter order cfg.preproc.bpfiltord = bandpass filter order cfg.preproc.lnfiltord = line noise notch filter order cfg.preproc.medianfiltord = length of median filter cfg.preproc.lpfilttype = digital filter type, 'but' (default) or 'fir' cfg.preproc.hpfilttype = digital filter type, 'but' (default) or 'fir' cfg.preproc.bpfilttype = digital filter type, 'but' (default) or 'fir' cfg.preproc.lpfiltdir = filter direction, 'twopass' (default) or 'onepass' cfg.preproc.hpfiltdir = filter direction, 'twopass' (default) or 'onepass' cfg.preproc.bpfiltdir = filter direction, 'twopass' (default) or 'onepass' cfg.preproc.detrend = 'no' or 'yes' cfg.preproc.demean = 'no' or 'yes' cfg.preproc.baselinewindow = [begin end] in seconds, the default is the complete trial cfg.preproc.hilbert = 'no' or 'yes' cfg.preproc.rectify = 'no' or 'yes'