Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision Both sides next revision
template:atlas [2018/10/21 14:57]
42.49.180.224 [Template anatomical atlases and parcellation schemes]
template:atlas [2018/05/12 02:36] (current)
169.229.158.194 [The AAL atlas]
Line 7: Line 7:
 In general an atlas can be read with **[[reference:​ft_read_atlas]]**. It is represented as a volumetric segmentation as in **[[reference:​ft_datatype_segmentation]]**,​ or as a surface-based parcellation as in **[[reference:​ft_datatype_parcellation]]**. The volume based representation can be used with **[[reference:​ft_volumelookup]]** or with the cfg.atlas option in **[[reference:​ft_sourceplot]]**. In general an atlas can be read with **[[reference:​ft_read_atlas]]**. It is represented as a volumetric segmentation as in **[[reference:​ft_datatype_segmentation]]**,​ or as a surface-based parcellation as in **[[reference:​ft_datatype_parcellation]]**. The volume based representation can be used with **[[reference:​ft_volumelookup]]** or with the cfg.atlas option in **[[reference:​ft_sourceplot]]**.
  
-In the FieldTrip release, you can find the volumetric or surface based atlases in the fieldtrip/​template/​xxx directory, with XXX being the specific template (e.g. "aal&​quot; ​or "afni").+In the FieldTrip release, you can find the volumetric or surface based atlases in the fieldtrip/​template/​xxx directory, with XXX being the specific template (e.g. "aal" ​or "afni"). 
 ===== The AFNI TTatlas+tlrc Dataset ​ ===== ===== The AFNI TTatlas+tlrc Dataset ​ =====
  
Line 188: Line 188:
   * D.L. Collins, A.P. Zijdenbos, V. Kollokian, J.G. Sled, N.J. Kabani, C.J. Holmes, A.C. Evans : "​Design and Construction of a Realistic Digital Brain Phantom"​ IEEE Transactions on Medical Imaging, vol.17, No.3, p.463--468, June 1998.   * D.L. Collins, A.P. Zijdenbos, V. Kollokian, J.G. Sled, N.J. Kabani, C.J. Holmes, A.C. Evans : "​Design and Construction of a Realistic Digital Brain Phantom"​ IEEE Transactions on Medical Imaging, vol.17, No.3, p.463--468, June 1998.
   * S.B. Eickhoff, K.E. Stephan, H. Mohlberg, C. Grefkes, G.R. Fink, K. Amunts, K. Zilles, A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data, NeuroImage 25(4), 2005, 1325-1335.   * S.B. Eickhoff, K.E. Stephan, H. Mohlberg, C. Grefkes, G.R. Fink, K. Amunts, K. Zilles, A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data, NeuroImage 25(4), 2005, 1325-1335.
-  * Wang L, Mruczek REB, Arcaro MJ, Kastner S. (2015) Probabilistic Maps of Visual Topography in  Human Cortex. Cerebral Cortex. 25: 3911-3931+  * Wang L, Mruczek REB, Arcaro MJ, Kastner S. (2015) Probabilistic Maps of Visual Topography in  Human Cortex. Cerebral Cortex. 25: 3911-3931 ​ 
 +