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tutorial:eventrelatedstatistics [2017/10/04 11:11]
robert extra "r" in Bonferroni
tutorial:eventrelatedstatistics [2018/04/09 20:22] (current)
Line 91: Line 91:
 cfg = []; cfg = [];
 cfg.showlabels ​ = '​yes';​ cfg.showlabels ​ = '​yes';​
-cfg.layout ​   = 'CTF151.lay';+cfg.layout ​   = 'CTF151_helmet.mat';
 figure; ft_multiplotER(cfg,​GA_FC,​ GA_FIC) figure; ft_multiplotER(cfg,​GA_FC,​ GA_FIC)
  
Line 235: Line 235:
 cfg = []; cfg = [];
 cfg.style ​    = '​blank';​ cfg.style ​    = '​blank';​
-cfg.layout ​   = 'CTF151.lay';+cfg.layout ​   = 'CTF151_helmet.mat';
 cfg.highlight = '​on';​ cfg.highlight = '​on';​
 cfg.highlightchannel = find(h); cfg.highlightchannel = find(h);
Line 326: Line 326:
 cfg = []; cfg = [];
 cfg.style ​    = '​blank';​ cfg.style ​    = '​blank';​
-cfg.layout ​   = 'CTF151.lay';+cfg.layout ​   = 'CTF151_helmet.mat';
 cfg.highlight = '​on';​ cfg.highlight = '​on';​
 cfg.highlightchannel = find(stat.mask);​ cfg.highlightchannel = find(stat.mask);​
Line 355: Line 355:
 cfg.method ​     = '​template';​ % try '​distance'​ as well cfg.method ​     = '​template';​ % try '​distance'​ as well
 cfg.template ​   = '​ctf151_neighb.mat'; ​              % specify type of template cfg.template ​   = '​ctf151_neighb.mat'; ​              % specify type of template
-cfg.layout ​     = 'CTF151.lay'; ​                     % specify layout of sensors*+cfg.layout ​     = 'CTF151_helmet.mat'; ​              ​% specify layout of sensors*
 cfg.feedback ​   = '​yes'; ​                            % show a neighbour plot  cfg.feedback ​   = '​yes'; ​                            % show a neighbour plot 
 neighbours ​     = ft_prepare_neighbours(cfg,​ GA_FC); % define neighbouring channels neighbours ​     = ft_prepare_neighbours(cfg,​ GA_FC); % define neighbouring channels
Line 388: Line 388:
 cfg = []; cfg = [];
 cfg.style ​    = '​blank';​ cfg.style ​    = '​blank';​
-cfg.layout ​   = 'CTF151.lay';+cfg.layout ​   = 'CTF151_helmet.mat';
 cfg.highlight = '​on';​ cfg.highlight = '​on';​
 cfg.highlightchannel = find(stat.mask);​ cfg.highlightchannel = find(stat.mask);​
Line 435: Line 435:
 cfg = []; cfg = [];
 cfg.highlightsymbolseries = ['​*','​*','​.','​.','​.'​];​ cfg.highlightsymbolseries = ['​*','​*','​.','​.','​.'​];​
-cfg.layout = 'CTF151.lay';+cfg.layout = 'CTF151_helmet.mat';
 cfg.contournum = 0; cfg.contournum = 0;
 cfg.markersymbol = '​.';​ cfg.markersymbol = '​.';​
Line 457: Line 457:
  
 <​note>​ <​note>​
-If you want to write up your results for a manuscript, you can describe them for example like this: +If you want to write up your results for a manuscript, you should check the guidelines on this page[[faq:​how_not_to_interpret_results_from_a_cluster-based_permutation_test|How NOT to interpret results from a cluster-based permutation test]].
- +
-"​A ​cluster-based permutation test revealed a significant left frontotemporal difference between the fully congruent and fully incongruent condition between 0.33 s and 0.52 s relative to stimulus onset (p<0.05)."+
  
 And be sure to cite the relevant papers (Robert Oostenveld'​s FieldTrip paper and the Eric Maris' cluster-based permutation paper) in your methods section! And be sure to cite the relevant papers (Robert Oostenveld'​s FieldTrip paper and the Eric Maris' cluster-based permutation paper) in your methods section!
 </​note>​ </​note>​
- 
 ===== Summary and suggested further reading ===== ===== Summary and suggested further reading =====