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tutorial:introduction [2018/10/21 15:20]
42.49.180.224 old revision restored (2017/08/17 12:34)
tutorial:introduction [2018/09/29 09:39] (current)
222.191.246.70 [Background]
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-{{tag>tutorial meg eeg raw timelock freq source statistics lfp spike cfg matlab}}+{{tag>tutorial meg eeg raw timelock freq source statistics lfp spike cfg matlab}}
  
 ====== Introduction to the FieldTrip toolbox ====== ====== Introduction to the FieldTrip toolbox ======
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 This tutorial will give you an introduction into how to use FieldTrip with MATLAB and how to make an analysis protocol. You will read a few examples of analysis protocols of EEG/MEG data analysis. This introduction,​ however, does not give detailed information about each analysis step. You will find those in other tutorials. You will find also useful information about how to use FieldTrip in the [[:​walkthrough|Fieldtrip Walkthrough]]. This tutorial will give you an introduction into how to use FieldTrip with MATLAB and how to make an analysis protocol. You will read a few examples of analysis protocols of EEG/MEG data analysis. This introduction,​ however, does not give detailed information about each analysis step. You will find those in other tutorials. You will find also useful information about how to use FieldTrip in the [[:​walkthrough|Fieldtrip Walkthrough]].
  
-&lt;note exercise&gt;+<note exercise>
 This short tutorial introduces the design of the FieldTrip toolbox. If you have some more time, you watch a more elaborate introduction in this lecture.  ​ This short tutorial introduces the design of the FieldTrip toolbox. If you have some more time, you watch a more elaborate introduction in this lecture.  ​
  
-{{youtube&gt;eUVL_twWNdk}} +{{youtube>eUVL_twWNdk}} 
-&lt;/note&gt;+</note>
 ===== Background ===== ===== Background =====
  
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 **//Figure 1; Analysis protocol for Event-Related Potentials (ERPs)//** **//Figure 1; Analysis protocol for Event-Related Potentials (ERPs)//**
  
-We will use the FieldTrip toolbox for EEG/MEG analysis that is developed within the Donders Centre for Cognitive Neuroimaging (DCCN). This software consists of a set of MATLAB functions (a toolbox) that implement the different steps. Each of the FieldTrip functions implements one tool, and by linking them you can perform a complete analysis. ​+We will use the FieldTrip toolbox for EEG/MEG analysis that is developed within the Donders Centre for Cognitive Neuroimaging (DCCN).__ This software consists of a set of MATLAB functions (a toolbox) that implement the different steps. Each of the FieldTrip functions implements one tool, and by linking them you can perform a complete analysis.__ 
  
 ===== The FieldTrip toolbox ===== ===== The FieldTrip toolbox =====
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   cfg1.trialdef.poststim ​      = 2;   cfg1.trialdef.poststim ​      = 2;
  
-The functions in the FieldTrip toolbox are executed with the configuration structure (&quot;cfg&quot;) and in most cases with a data structure as inputs+The functions in the FieldTrip toolbox are executed with the configuration structure ("cfg") and in most cases with a data structure as inputs
  
 Examples: Examples:
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 The help included in each function will explain the configurable settings and how they should be specified. In MATLAB, you can get help for a specific function by typing The help included in each function will explain the configurable settings and how they should be specified. In MATLAB, you can get help for a specific function by typing
  
-  help &lt;function name&gt;+  help <function name>
  
 e.g. e.g.
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 Here are the [[:​faq|frequently asked questions]] that are MATLAB specific: Here are the [[:​faq|frequently asked questions]] that are MATLAB specific:
-{{topic&gt;matlab +faq &amp;list}}+{{topic>matlab +faq &list}}
  
 Here are the [[:​example|example scripts]] that are MATLAB specific: Here are the [[:​example|example scripts]] that are MATLAB specific:
-{{topic&gt;matlab +example &amp;list}}+{{topic>matlab +example &list}}